@ Vegangelica:
When you zoom into the offending clips, are you sure that they're snapping properly to the same grid marker? If you zoom all the way in to the beginning of both clips and see that they're not both snapping to the same line perfectly, and their waveforms don't match up, then it's a snap-to-grid issue. This can be caused by your snap settings either being too short (like 64ths or 128ths) or disabled entirely in the new program, or migrating the song with snap settings from the previous program might have caused issues by way of a bug.
If that's the issue, then you'll literally have to go through and line up all your clips to the proper positions.
If it's not, let me know.
As far as performance issues, make sure you're meeting the suggested system requirements for the software. If you're only meeting the minimum system requirements, you're going to have issues all the time.
By the way, the recording thread is getting re-done. I'm just going to provide links to resources and answer questions instead of going overboard with info.
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